Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
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DB built by FlyBase

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Gene: vsg FBgn0045823

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Description

visgun

Gene Synonyms

Location

Primary_assembly 3L: 9,714,324-9,717,716 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 5 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
vsg-RE	FBtr0330097	2164	262aa	FBpp0303130	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHX2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
vsg-RD	FBtr0076400	2273	183aa	FBpp0076129	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT37	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
vsg-RA	FBtr0076398	2270	182aa	FBpp0076127	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I0D8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vsg-RC	FBtr0076401	2167	183aa	FBpp0076130	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT37	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
vsg-RB	FBtr0076399	2164	182aa	FBpp0076128	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I0D8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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