Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
Molecular interactions
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External references
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ID History
- Gene history

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DB built by FlyBase

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Gene: CG30460 FBgn0050460

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Location

Primary_assembly 2R: 17,065,971-17,087,633 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 9 transcripts (splice variants), 61 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG30460-RC	FBtr0087010	6510	1868aa	FBpp0086161	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAP8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG30460-RE	FBtr0113378	6950	1711aa	FBpp0112290	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYH3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG30460-RF	FBtr0273340	6303	1799aa	FBpp0271848	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZI6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG30460-RA	FBtr0087011	5942	1520aa	FBpp0086162	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAQ0	-	-
CG30460-RG	FBtr0273341	5346	1480aa	FBpp0271849	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZI7 Q6NQX3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG30460-RD	FBtr0087012	5099	1402aa	FBpp0086163	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAQ1	-	-
CG30460-RH	FBtr0300958	4400	1006aa	FBpp0290180	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MRK6	-	-
CG30460-RB	FBtr0087009	4368	1132aa	FBpp0086160	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MRQ9	-	-
CG30460-RI	FBtr0302611	2918	888aa	FBpp0291767	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD34 C7LAA8	-	-

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Summary

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