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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG42340 FBgn0259242

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Location

Primary_assembly X: 6,423,123-6,524,323 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 112 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42340-RE	FBtr0479806	5085	759aa	FBpp0428139	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EDG1 Q29R21	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG42340-RC	FBtr0299863	5725	484aa	FBpp0289141	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0W7	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG42340-RB	FBtr0331297	5085	720aa	FBpp0303729	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R9PY17	-	-
CG42340-RD	FBtr0332386	4614	484aa	FBpp0304660	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0W7	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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