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DB built by FlyBase

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Gene: Alh FBgn0261238

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Description

Alhambra

Gene Synonyms

Location

Primary_assembly 3R: 7,094,596-7,124,185 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 13 transcripts (splice variants), 53 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Alh-RP	FBtr0334677	6029	1717aa	FBpp0306738	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGP1 Q962D1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Alh-RH	FBtr0300494	5420	1165aa	FBpp0289721	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJ76	-	-
Alh-RJ	FBtr0330367	5420	1448aa	FBpp0303393	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JQU6 N0A8E1 Q058V5 Q962D2	-	-
Alh-RI	FBtr0300495	5327	1134aa	FBpp0289722	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJ75	-	-
Alh-RO	FBtr0334676	5324	1133aa	FBpp0306737	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFQ4 Q058V5 Q9BMZ8	-	-
Alh-RM	FBtr0334674	5196	1084aa	FBpp0306735	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8INT1	-	-
Alh-RN	FBtr0334675	5100	1052aa	FBpp0306736	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF76	-	-
Alh-RK	FBtr0334672	5033	1385aa	FBpp0306733	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGB4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Alh-RA	FBtr0081612	5006	1376aa	FBpp0081129	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YU77 Q8SZW9 Q962D1 Q9VI63	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Alh-RF	FBtr0113200	4906	1165aa	FBpp0112112	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JQU7	-	-
Alh-RL	FBtr0334673	4850	1332aa	FBpp0306734	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFD2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Alh-RD	FBtr0081613	4823	1323aa	FBpp0081130	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSZ0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Alh-RB	FBtr0081614	3883	824aa	FBpp0081131	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VI61	-	-

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Summary

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