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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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DB built by FlyBase

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Gene: CG42613 FBgn0261262

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Location

Primary_assembly 3R: 18,929,196-18,978,088 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 117 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42613-RE	FBtr0304685	6672	1188aa	FBpp0293228	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K760	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG42613-RF	FBtr0304686	5507	845aa	FBpp0293229	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K686 B3DNL6	-	-
CG42613-RG	FBtr0304687	4961	1051aa	FBpp0293230	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6C8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42613-RI	FBtr0481666	4954	1164aa	FBpp0428444	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0IQI1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42613-RH	FBtr0304688	1160	1155aa	FBpp0293231	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961I3 Q9VE20	-	-

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Summary

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