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DB built by FlyBase

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Gene: Opa1 FBgn0261276

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Description

Optic atrophy 1

Gene Synonyms

Location

Primary_assembly 2R: 14,230,611-14,235,449 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 78 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Opa1-RA	FBtr0087574	3217	972aa	FBpp0086700	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9N0 F0JAH2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Opa1-RE	FBtr0339761	3851	622aa	FBpp0308808	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LF33	-	-
Opa1-RC	FBtr0339759	3208	969aa	FBpp0308806	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGF5 E8NH94	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Opa1-RB	FBtr0087573	3100	933aa	FBpp0086699	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95U20	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Opa1-RD	FBtr0339760	3091	930aa	FBpp0308807	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFB8 F0JAK2	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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