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DB built by FlyBase

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Gene: rdgA FBgn0261549

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Description

retinal degeneration A

Gene Synonyms

Location

Primary_assembly X: 8,907,068-9,029,476 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 11 transcripts (splice variants), 80 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
rdgA-RH	FBtr0333601	8292	1462aa	FBpp0305778	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YK83 M9PHG3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
rdgA-RI	FBtr0333602	10147	1460aa	FBpp0305779	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YK80 F6J4T3 M9PH20	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rdgA-RL	FBtr0479750	5808	1365aa	FBpp0428093	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EFG8 C0PVA9	-	-
rdgA-RA	FBtr0302660	5598	1457aa	FBpp0291800	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J4T4 Q09103	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rdgA-RG	FBtr0302665	5583	1452aa	FBpp0291805	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MS31	-	-
rdgA-RK	FBtr0344166	5561	1314aa	FBpp0310580	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JEJ9	-	-
rdgA-RJ	FBtr0344165	5497	1307aa	FBpp0310579	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JE67	-	-
rdgA-RC	FBtr0302662	4974	1024aa	FBpp0291802	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rdgA-RD	FBtr0302663	4276	1009aa	FBpp0291803	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MSN3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rdgA-RE	FBtr0302664	4222	991aa	FBpp0291804	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A023GPM5 Q29QH6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
rdgA-RB	FBtr0302661	3919	1027aa	FBpp0291801	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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