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DB built by FlyBase

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Gene: CG42748 FBgn0261802

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Location

Primary_assembly 2L: 22,131,221-22,166,221 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 11 transcripts (splice variants) and 36 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42748-RK	FBtr0333743	9304	2190aa	FBpp0305885	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDE6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42748-RG	FBtr0303277	10534	2139aa	FBpp0292369	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R9PY70	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42748-RM	FBtr0333745	6913	1636aa	FBpp0305887	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDL8	-	-
CG42748-RB	FBtr0303271	6880	1710aa	FBpp0292363	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9N7	-	-
CG42748-RD	FBtr0303273	6732	1639aa	FBpp0292365	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DZ24	-	-
CG42748-RJ	FBtr0333742	6550	1717aa	FBpp0305884	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBG0	-	-
CG42748-RC	FBtr0303272	6348	1710aa	FBpp0292364	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9N7	-	-
CG42748-RL	FBtr0333744	5823	822aa	FBpp0305886	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDY6	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG42748-RF	FBtr0303275	4450	413aa	FBpp0292367	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEE9 M9MSJ5	-	-
CG42748-RH	FBtr0303276	4308	778aa	FBpp0292368	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9N5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42748-RE	FBtr0303274	3774	349aa	FBpp0292366	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DZ25	-	-

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Summary

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