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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Drosophilidae)
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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DB built by FlyBase

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Gene: CG46301 FBgn0283651

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Location

Primary_assembly 2L: 14,104,090-14,160,587 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants) and 75 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG46301-RE	FBtr0445730	5632	1237aa	FBpp0401605	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1W5PXH3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG46301-RD	FBtr0445729	4048	636aa	FBpp0401604	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1W5Q009 F9W333	-	-
CG46301-RF	FBtr0445732	2458	667aa	FBpp0401607	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1W5PVN5 M9PCX5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG46301-RC	FBtr0445731	2385	623aa	FBpp0401606	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1W5PW03	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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