Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: red FBgn0285913

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Description

red Malpighian tubules

Gene Synonyms

Location

Primary_assembly 3R: 14,289,071-14,302,276 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 7 transcripts (splice variants) and 32 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
red-RG	FBtr0344157	2535	366aa	FBpp0310570	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2Z1YWR5 A0A2Z1Z390 Q961C8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
red-RB	FBtr0082921	2316	366aa	FBpp0082380	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961C8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
red-RA	FBtr0082923	2169	343aa	FBpp0082382	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2Z1Z695 A0A2Z1Z8F4 Q9I7J4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
red-RF	FBtr0309999	2113	366aa	FBpp0301705	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961C8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
red-RD	FBtr0309997	2055	343aa	FBpp0301703	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7J4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
red-RC	FBtr0082922	1997	366aa	FBpp0082381	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961C8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
red-RE	FBtr0309998	1927	343aa	FBpp0301704	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7J4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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