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DB built by FlyBase

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Gene: Cip4 FBgn0035533

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Description

Cdc42-interacting protein 4

Gene Synonyms

Location

Primary_assembly 3L: 4,322,491-4,364,102 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 11 transcripts (splice variants) and 86 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Cip4-RB	FBtr0113138	2637	665aa	FBpp0112051	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNK4 C6SV38 Q8SYR8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Cip4-RG	FBtr0306534	3507	612aa	FBpp0297492	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE16	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Cip4-RK	FBtr0333571	3504	611aa	FBpp0305748	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PE52	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Cip4-RJ	FBtr0333570	3477	602aa	FBpp0305747	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBP3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Cip4-RH	FBtr0308201	3422	644aa	FBpp0300521	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D5SHU5 M9ND42	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Cip4-RI	FBtr0308202	3359	623aa	FBpp0300522	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF07	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Cip4-RD	FBtr0306095	2580	646aa	FBpp0297232	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND44	-	-
Cip4-RA	FBtr0073339	2525	631aa	FBpp0073195	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VZD7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Cip4-RE	FBtr0306096	2504	624aa	FBpp0297233	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF10	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Cip4-RC	FBtr0306094	2468	612aa	FBpp0297231	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE16	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Cip4-RF	FBtr0306533	2414	628aa	FBpp0297491	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDH6	-	-

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Summary

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