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DB built by FlyBase

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Gene: Pdfr FBgn0260753

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Description

Pigment-dispersing factor receptor

Gene Synonyms

Location

Primary_assembly X: 2,552,206-2,578,640 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 61 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pdfr-RB	FBtr0308565	3230	738aa	FBpp0300789	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D5SHT0 M9NET6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Pdfr-RC	FBtr0340084	3331	724aa	FBpp0309083	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JDL2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pdfr-RD	FBtr0340085	3239	724aa	FBpp0309084	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JDL2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pdfr-RA	FBtr0070436	2910	669aa	FBpp0099841	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W4Y2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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