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DB built by FlyBase

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Gene: CG43897 FBgn0264489

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Location

Primary_assembly 3L: 9,813,847-9,834,345 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 17 transcripts (splice variants) and 13 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG43897-RM	FBtr0332830	5929	1385aa	FBpp0305053	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PF57	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG43897-RN	FBtr0332831	5587	1339aa	FBpp0305054	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT55	-	-
CG43897-RO	FBtr0332832	3546	215aa	FBpp0305055	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PF03	-	-
CG43897-RC	FBtr0332821	3497	501aa	FBpp0305044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGP1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43897-RR	FBtr0332835	3268	446aa	FBpp0305058	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PER6	-	-
CG43897-RB	FBtr0332819	3240	501aa	FBpp0305042	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGP1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43897-RL	FBtr0332829	3107	500aa	FBpp0305052	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PER0	-	-
CG43897-RJ	FBtr0332827	3076	501aa	FBpp0305050	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGP1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43897-RK	FBtr0332828	3074	502aa	FBpp0305051	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6TP34 M9PC24	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43897-RG	FBtr0332824	3056	354aa	FBpp0305047	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUD8	-	-
CG43897-RA	FBtr0332823	2956	462aa	FBpp0305046	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86BH9	-	-
CG43897-RP	FBtr0332833	2913	123aa	FBpp0305056	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PVC0 M9PHY1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43897-RQ	FBtr0332834	2827	299aa	FBpp0305057	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PC30	-	-
CG43897-RH	FBtr0332825	2802	355aa	FBpp0305048	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q867T3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG43897-RF	FBtr0332822	2799	354aa	FBpp0305045	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6TP34 Q7KUD8	-	-
CG43897-RI	FBtr0332826	2548	206aa	FBpp0305049	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86LF6	-	-
CG43897-RE	FBtr0332820	2515	315aa	FBpp0305043	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PVC0 Q8IGH4	-	-

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Summary

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