abdominal A
Primary_assembly 3R: 16,807,214-16,830,049 reverse strand.
BDGP6.32:AE014297.3
This gene has 4 transcripts (splice variants), 113 orthologues and 14 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| abd-A-RB | FBtr0083388 | 3935 | 590aa | FBpp0082829 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P29555 | NM_001170161.2 NM_001260216.2 NM_057345.5 NM_169733 NM_169733.5 NP_001163632.1 NP_001247145.1 NP_476693.1 NP_732176 NP_732176.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| abd-A-RD | FBtr0306337 | 5269 | 330aa | FBpp0297433 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JIM9 | NM_001170161.2 NM_001260216 NM_001260216.2 NM_057345.5 NP_001163632.1 NP_001247145 NP_001247145.1 NP_476693.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| abd-A-RC | FBtr0300485 | 4559 | 330aa | FBpp0289712 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JIM9 | NM_001170161 NM_001170161.2 NM_001260216.2 NM_057345.5 NP_001163632 NP_001163632.1 NP_001247145.1 NP_476693.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| abd-A-RA | FBtr0083387 | 4458 | 330aa | FBpp0082828 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JIM9 | NM_001170161.2 NM_001260216.2 NM_057345 NM_057345.5 NP_001163632.1 NP_001247145.1 NP_476693 NP_476693.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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