Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: abd-A FBgn0000014

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Description

abdominal A

Gene Synonyms

Location

Primary_assembly 3R: 16,807,214-16,830,049 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 148 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
abd-A-RB	FBtr0083388	3935	590aa	FBpp0082829	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P29555	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
abd-A-RD	FBtr0306337	5269	330aa	FBpp0297433	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIM9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
abd-A-RC	FBtr0300485	4559	330aa	FBpp0289712	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIM9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
abd-A-RA	FBtr0083387	4458	330aa	FBpp0082828	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIM9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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