cactus
Primary_assembly 2L: 16,313,036-16,326,207 reverse strand.
BDGP6.32:AE014134.6
This gene has 5 transcripts (splice variants), 109 orthologues and 3 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| cact-RD | FBtr0080847 | 2178 | 500aa | FBpp0089296 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PD95 Q03017 | NM_001273567.1 NM_057594.4 NM_057595.4 NM_165152.2 NM_205999 NM_205999.2 NP_001260496.1 NP_476942.1 NP_476943.1 NP_723960.1 NP_995721 NP_995721.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| cact-RC | FBtr0080846 | 2356 | 482aa | FBpp0080404 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_057595 NM_057595.4 NP_476943 NP_476943.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| cact-RB | FBtr0080845 | 2005 | 500aa | FBpp0080403 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C1C5B1 M9PD95 Q03017 | NM_001273567.1 NM_057594 NM_057594.4 NM_057595.4 NM_165152.2 NM_205999.2 NP_001260496.1 NP_476942 NP_476942.1 NP_476943.1 NP_723960.1 NP_995721.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| cact-RE | FBtr0337081 | 1999 | 500aa | FBpp0308004 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PD95 Q03017 | NM_001273567 NM_001273567.1 NM_057594.4 NM_057595.4 NM_165152.2 NM_205999.2 NP_001260496 NP_001260496.1 NP_476942.1 NP_476943.1 NP_723960.1 NP_995721.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| cact-RA | FBtr0080844 | 1893 | 500aa | FBpp0080402 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PD95 Q03017 | NM_001273567.1 NM_057594.4 NM_057595.4 NM_165152 NM_165152.2 NM_205999.2 NP_001260496.1 NP_476942.1 NP_476943.1 NP_723960 NP_723960.1 NP_995721.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
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