Summary
- Splice variants
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DB built by FlyBase

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Gene: capu FBgn0000256

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Description

cappuccino

Gene Synonyms

Location

Primary_assembly 2L: 3,872,646-3,902,860 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 9 transcripts (splice variants), 36 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
capu-RF	FBtr0290078	4537	1361aa	FBpp0288517	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z011 C6TPB3 Q29QD2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
capu-RD	FBtr0077511	4305	1207aa	FBpp0077200	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VQV9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
capu-RE	FBtr0290077	4294	1280aa	FBpp0288516	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z010 Q5BHU8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
capu-RI	FBtr0290081	4286	1298aa	FBpp0288520	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z013	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
capu-RA	FBtr0077513	3861	1059aa	FBpp0077202	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24120 Q5BHU8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
capu-RJ	FBtr0290082	3721	1089aa	FBpp0288521	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q29QD2 Q8IQ12	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
capu-RH	FBtr0290080	3713	1107aa	FBpp0288519	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z012 C6TPB3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
capu-RB	FBtr0077512	3629	1049aa	FBpp0077201	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MRP5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
capu-RG	FBtr0290079	3059	932aa	FBpp0288518	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z014	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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