Summary
- Splice variants
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DB built by FlyBase

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Gene: cg FBgn0000289

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Description

combgap

Gene Synonyms

Location

Primary_assembly 2R: 14,173,693-14,182,838 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 11 transcripts (splice variants), 69 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
cg-RL	FBtr0339961	4728	837aa	FBpp0308983	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYD1 C9QPD9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
cg-RF	FBtr0112795	5066	770aa	FBpp0111707	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYD3 Q8IGK0 Q9GT73	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
cg-RN	FBtr0346946	4814	686aa	FBpp0312412	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUP1	-	-
cg-RJ	FBtr0290035	4692	825aa	FBpp0288474	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYD2	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
cg-RM	FBtr0339962	3385	780aa	FBpp0308984	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFC7 Q8T0L4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
cg-RI	FBtr0290034	3364	773aa	FBpp0288473	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZE6	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
cg-RB	FBtr0087527	3361	772aa	FBpp0086656	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9M3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
cg-RD	FBtr0087526	3058	671aa	FBpp0086655	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KHK4	-	-
cg-RK	FBtr0339960	3040	665aa	FBpp0308982	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LF29 Q95RL3	-	-
cg-RA	FBtr0087529	2881	671aa	FBpp0086658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KHK4 Q9NI49	-	-
cg-RC	FBtr0087528	2866	629aa	FBpp0086657	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9M4	-	-

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Summary

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