Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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- Orthologues
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DB built by FlyBase

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Gene: Col4a1 FBgn0000299

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Description

Collagen type IV alpha 1

Gene Synonyms

Location

Primary_assembly 2L: 5,029,609-5,037,279 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 3 transcripts (splice variants), 160 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Col4a1-RB	FBtr0079002	6101	1779aa	FBpp0078641	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P08120	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Col4a1-RA	FBtr0079003	6000	1779aa	FBpp0078642	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7FNQ3 P08120	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Col4a1-RC	FBtr0079001	5635	1779aa	FBpp0078640	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P08120	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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