Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: cl FBgn0000318

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Description

clot

Gene Synonyms

Location

Primary_assembly 2L: 5,520,135-5,521,382 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 3 transcripts (splice variants), 113 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
cl-RB	FBtr0329967	689	126aa	FBpp0303002	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMQ9	NM_001273169 NM_001273169.1 NM_001273170.1 NM_135086.4 NP_001260098 NP_001260098.1 NP_001260099.1 NP_608930.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
cl-RC	FBtr0329968	674	126aa	FBpp0303003	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMQ9	NM_001273169.1 NM_001273170 NM_001273170.1 NM_135086.4 NP_001260098.1 NP_001260099 NP_001260099.1 NP_608930.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
cl-RA	FBtr0079095	615	126aa	FBpp0078728	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMQ9	NM_001273169.1 NM_001273170.1 NM_135086 NM_135086.4 NP_001260098.1 NP_001260099.1 NP_608930 NP_608930.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays