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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: ec FBgn0000542

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Description

echinus

Gene Synonyms

Location

Primary_assembly X: 3,811,698-3,857,621 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 3 transcripts (splice variants) and 40 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ec-RC	FBtr0112802	6681	1765aa	FBpp0111714	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1W9P9 Q7K7E6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ec-RB	FBtr0112801	6863	1746aa	FBpp0111713	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1W9Q0 Q6IIR9	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ec-RA	FBtr0070606	6759	1712aa	FBpp0100019	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O77283 Q6IIR8	-	-

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Summary

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