Summary
- Splice variants
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DB built by FlyBase

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Gene: gd FBgn0000808

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Description

gastrulation-defective

Gene Synonyms

Location

Primary_assembly X: 11,985,154-11,987,764 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 57 orthologues and 27 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
gd-RD	FBtr0332309	1923	531aa	FBpp0304588	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J600 F6J613 F6J621 F6J627 F6J634 O62589	NM_001272549.1 NM_001272550 NM_001272550.1 NM_001272551.1 NM_001316623.1 NP_001259478.1 NP_001259479 NP_001259479.1 NP_001259480.1 NP_001303552.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
gd-RF	FBtr0347416	2234	528aa	FBpp0312566	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J5Z6 F6J5Z9 F6J606 F6J607 F6J629 F6J632	NM_001272549.1 NM_001316623 NM_001316623.1 NP_001259478.1 NP_001303552 NP_001303552.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
gd-RE	FBtr0332310	1932	179aa	FBpp0304589	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6J5Y8	NM_001272551 NM_001272551.1 NP_001259480 NP_001259480.1	-
gd-RC	FBtr0332308	1914	528aa	FBpp0304587	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_001272549 NM_001272549.1 NM_001316623.1 NP_001259478 NP_001259478.1 NP_001303552.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays