Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: pum FBgn0003165

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Description

pumilio

Gene Synonyms

Location

Primary_assembly 3R: 9,066,343-9,237,682 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 8 transcripts (splice variants) and 94 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pum-RG	FBtr0333667	10223	1533aa	FBpp0305823	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFF0 P25822	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
pum-RH	FBtr0333668	8057	921aa	FBpp0305824	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFX7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pum-RB	FBtr0081993	7473	1185aa	FBpp0081473	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A075BI71 A0A075BIA6 A0A075BJE8 A0A075BJF4 A0A075BJN8 A0A075BJP0 A0A075BJY4 A0A075BLU8 A0A075BLV2 A0A075BLV4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pum-RC	FBtr0081992	6809	1533aa	FBpp0081472	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A075BI55 A0A075BJ98 A0A075BJA1 A0A075BJE1 A0A075BJG6 A0A075BJW8 A0A075BLT6 A0A0B4KFF0 P25822	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
pum-RA	FBtr0081990	6661	1533aa	FBpp0081470	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFF0 P25822	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
pum-RD	FBtr0081991	6659	1533aa	FBpp0081471	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFF0 P25822	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
pum-RE	FBtr0081994	4685	935aa	FBpp0081474	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pum-RF	FBtr0305197	4655	925aa	FBpp0293727	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K612	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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