Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: rst FBgn0003285

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Description

roughest

Gene Synonyms

Location

Primary_assembly X: 2,950,399-2,973,834 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 2 transcripts (splice variants), 130 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
rst-RB	FBtr0343758	6251	764aa	FBpp0310320	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08180 X2JCF8	NM_001297906 NM_001297906.1 NM_080319.5 NP_001284835 NP_001284835.1 NP_525058.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
rst-RA	FBtr0070562	4818	764aa	FBpp0070537	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08180 X2JCF8	NM_001297906.1 NM_080319 NM_080319.5 NP_001284835.1 NP_525058 NP_525058.2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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