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DB built by FlyBase

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Gene: Su(var)2-10 FBgn0003612

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Description

Suppressor of variegation 2-10

Gene Synonyms

Location

Primary_assembly 2R: 9,116,122-9,122,000 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 14 transcripts (splice variants), 164 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Su(var)2-10-RI	FBtr0088570	2402	640aa	FBpp0087651	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7P5	NM_165645 NM_165645.2 NP_724749 NP_724749.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Su(var)2-10-RH	FBtr0088571	2943	569aa	FBpp0087652	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7P7	NM_165647 NM_165647.3 NP_724751 NP_724751.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RE	FBtr0088576	2847	522aa	FBpp0087657	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9XYM5	NM_165652 NM_165652.3 NP_724756 NP_724756.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RG	FBtr0088575	2632	604aa	FBpp0087656	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7P8	NM_165648 NM_165648.3 NP_724752 NP_724752.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RK	FBtr0302506	2632	537aa	FBpp0291668	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JCQ7	NM_001201958 NM_001201958.2 NP_001188887 NP_001188887.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RF	FBtr0088574	2548	533aa	FBpp0087655	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5BIG7	NM_165650 NM_165650.3 NP_724754 NP_724754.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RN	FBtr0343996	2414	577aa	FBpp0310445	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LEH9	NM_001299299 NM_001299299.1 NP_001286228 NP_001286228.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RC	FBtr0088573	2389	565aa	FBpp0087654	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7P9	NM_165649 NM_165649.2 NP_724753 NP_724753.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RB	FBtr0088577	2306	593aa	FBpp0087658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7Q1	NM_165651 NM_165651.2 NP_724755 NP_724755.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RD	FBtr0088572	2159	601aa	FBpp0087653	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGK3	NM_165646 NM_165646.2 NP_724750 NP_724750.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RL	FBtr0302507	2150	584aa	FBpp0291669	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD33 C0PDF2 C1C3E9	NM_001201959 NM_001201959.2 NP_001188888 NP_001188888.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RM	FBtr0306705	2149	570aa	FBpp0297644	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6T9	NM_001259286 NM_001259286.2 NP_001246215 NP_001246215.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RA	FBtr0088578	2063	554aa	FBpp0087659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KNF5	NM_078940 NM_078940.3 NP_523664 NP_523664.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Su(var)2-10-RJ	FBtr0302505	2054	537aa	FBpp0291667	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD03	NM_001201957 NM_001201957.2 NP_001188886 NP_001188886.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays