Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: sws FBgn0003656

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Description

swiss cheese

Gene Synonyms

Location

Primary_assembly X: 7,956,820-7,968,236 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 3 transcripts (splice variants) and 144 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sws-RA	FBtr0071125	5571	1425aa	FBpp0071077	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U969	NM_078520 NM_078520.3 NM_167141.3 NP_511075 NP_511075.3 NP_727225.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
sws-RC	FBtr0301675	5571	1425aa	FBpp0290889	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JJF4	NM_167140 NM_167140.2 NP_727224 NP_727224.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
sws-RB	FBtr0071126	1928	341aa	FBpp0071078	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_167141 NM_167141.3 NP_727225 NP_727225.1	-

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Summary

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Gene-based displays