Protein tyrosine phosphatase 10D
Primary_assembly X: 11,622,015-11,677,338 forward strand.
BDGP6.32:AE014298.5
This gene has 6 transcripts (splice variants), 137 orthologues and 15 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Ptp10D-RG | FBtr0330393 | 8642 | 1990aa | FBpp0303419 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P35992 | NM_001144715.2 NM_001272524.1 NM_001272525.1 NM_167292.3 NM_206690.2 NM_206691 NM_206691.3 NP_001138187.1 NP_001259453.1 NP_001259454.1 NP_727544.2 NP_996413.2 NP_996414 NP_996414.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Ptp10D-RH | FBtr0330394 | 8335 | 1653aa | FBpp0303420 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_001272524 NM_001272524.1 NP_001259453 NP_001259453.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Ptp10D-RF | FBtr0330392 | 7385 | 1990aa | FBpp0303418 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P35992 | NM_001144715.2 NM_001272524.1 NM_001272525.1 NM_167292.3 NM_206690 NM_206690.2 NM_206691.3 NP_001138187.1 NP_001259453.1 NP_001259454.1 NP_727544.2 NP_996413 NP_996413.2 NP_996414.2 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Ptp10D-RB | FBtr0073522 | 7308 | 1631aa | FBpp0073369 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YGH3 | NM_167292 NM_167292.3 NP_727544 NP_727544.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Ptp10D-RE | FBtr0273235 | 7269 | 1558aa | FBpp0271743 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_001144715 NM_001144715.2 NM_001272525.1 NP_001138187 NP_001138187.1 NP_001259454.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Ptp10D-RI | FBtr0331406 | 7142 | 1558aa | FBpp0303823 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_001144715.2 NM_001272525 NM_001272525.1 NP_001138187.1 NP_001259454 NP_001259454.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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