Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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- Gene gain/loss tree
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- GO: Molecular function
- GO: Cellular component
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DB built by FlyBase

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Gene: enc FBgn0004875

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Description

encore

Gene Synonyms

Location

Primary_assembly 3L: 3,818,679-3,842,326 forward strand.

BDGP6.54:AE014296.5

About this gene

This gene has 7 transcripts (splice variants) and 66 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
enc-RF	FBtr0333208	7638	1942aa	FBpp0305410	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PH77	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
enc-RA	FBtr0073153	8375	1823aa	FBpp0089267	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
enc-RE	FBtr0112845	7623	1937aa	FBpp0111758	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNJ9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
enc-RD	FBtr0112844	7323	1818aa	FBpp0111757	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MSX1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
enc-RH	FBtr0333210	7293	1827aa	FBpp0305412	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PE05	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
enc-RB	FBtr0073152	7266	1818aa	FBpp0073011	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MSX1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
enc-RG	FBtr0333209	7180	1798aa	FBpp0305411	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBM2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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