Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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- Orthologues
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DB built by FlyBase

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Gene: Vha55 FBgn0005671

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Description

Vacuolar H[+]-ATPase 55kD subunit

Gene Synonyms

Location

Primary_assembly 3R: 12,623,762-12,627,829 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 177 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Vha55-RB	FBtr0082670	2722	490aa	FBpp0082139	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIJ5 P31409	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Vha55-RA	FBtr0082671	2658	490aa	FBpp0082140	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIJ5 P31409	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Vha55-RC	FBtr0301661	2048	490aa	FBpp0290875	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIJ5 P31409	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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