Syndecan
Primary_assembly 2R: 21,392,402-21,481,176 reverse strand.
BDGP6.32:AE013599.5
This gene has 9 transcripts (splice variants) and 108 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Sdc-RJ | FBtr0342894 | 2770 | 495aa | FBpp0309695 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JGQ9 | NM_001169767 NM_001169767.3 NP_001163238 NP_001163238.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Sdc-RI | FBtr0342893 | 3982 | 494aa | FBpp0309694 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7YZN0 | NM_001144257 NM_001144257.4 NP_001137729 NP_001137729.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Sdc-RK | FBtr0342895 | 3466 | 322aa | FBpp0309696 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_166450 NP_726072 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Sdc-RG | FBtr0305897 | 2944 | 75aa | FBpp0297065 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K862 | NM_001259518 NM_001259518.2 NP_001246447 NP_001246447.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Sdc-RL | FBtr0474169 | 2482 | 408aa | FBpp0423168 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4P7VJV5 | NM_001369961 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Sdc-RA | FBtr0071706 | 2482 | 399aa | FBpp0071623 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P49415 | NM_057617 NM_057617.5 NM_166449.5 NP_476965 NP_476965.1 NP_726071.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Sdc-RH | FBtr0342892 | 2245 | 266aa | FBpp0309693 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4LG79 | NM_001299749 NM_001299749.1 NP_001286678 NP_001286678.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Sdc-RB | FBtr0071707 | 1985 | 226aa | FBpp0071624 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_166449 NM_166449.5 NP_726071 NP_726071.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Sdc-RD | FBtr0273206 | 1869 | 398aa | FBpp0271714 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7YZM9 | NM_001144256 NM_001144256.2 NP_001137728 NP_001137728.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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