mustard
Primary_assembly 3R: 5,270,116-5,350,443 reverse strand.
BDGP6.32:AE014297.3
This gene has 23 transcripts (splice variants), 138 orthologues and 2 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| mtd-RV | FBtr0306694 | 5689 | 1344aa | FBpp0297633 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K620 C6TPC2 F3YDK0 | NM_001259999 NM_001259999.2 NP_001246928 NP_001246928.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| mtd-RB | FBtr0078810 | 8072 | 1270aa | FBpp0078453 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VNA1 | NM_001031977.3 NM_143760 NM_143760.4 NM_169038.3 NP_001027148.1 NP_652017 NP_652017.1 NP_730909.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RW | FBtr0306695 | 6314 | 1180aa | FBpp0297634 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6S8 Q7K554 | NM_001260000 NM_001260000.2 NP_001246929 NP_001246929.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RX | FBtr0308580 | 5976 | 1127aa | FBpp0300804 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VNA2 | NM_169047 NM_169047.3 NP_730918 NP_730918.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RP | FBtr0110933 | 5373 | 1314aa | FBpp0110233 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q0KIB9 | NM_001043213 NM_001043213.3 NP_001036678 NP_001036678.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RN | FBtr0100199 | 5214 | 1270aa | FBpp0099569 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VNA1 | NM_001031977 NM_001031977.3 NM_143760.4 NM_169038.3 NP_001027148 NP_001027148.1 NP_652017.1 NP_730909.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RT | FBtr0273433 | 5170 | 1106aa | FBpp0271941 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z0T3 | NM_001144536.2 NM_001144537 NM_001144537.2 NP_001138008.1 NP_001138009 NP_001138009.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RU | FBtr0273434 | 5169 | 1246aa | FBpp0271942 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4V2F2 | NM_169039 NM_169039.5 NP_730910 NP_730910.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RJ | FBtr0078811 | 5167 | 1270aa | FBpp0078454 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VNA1 | NM_001031977.3 NM_143760.4 NM_169038 NM_169038.3 NP_001027148.1 NP_652017.1 NP_730909 NP_730909.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RY | FBtr0308581 | 4905 | 1158aa | FBpp0300805 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K699 D5A7L1 | NM_001260001 NM_001260001.2 NP_001246930 NP_001246930.1 | - |
| mtd-RI | FBtr0078814 | 4838 | 213aa | FBpp0078457 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IPN7 | NM_170642 NM_170642.3 NP_730913 NP_730913.1 | - |
| mtd-RG | FBtr0078818 | 4780 | 1033aa | FBpp0089229 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8MSQ5 | NM_206429 NM_206429.2 NP_996151 NP_996151.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RA | FBtr0078817 | 4719 | 210aa | FBpp0078460 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KTR7 | NM_170644 NM_170644.3 NP_730915 NP_730915.1 | - |
| mtd-RS | FBtr0273432 | 4651 | 1106aa | FBpp0271940 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z0T3 | NM_001144536 NM_001144536.2 NM_001144537.2 NP_001138008 NP_001138008.1 NP_001138009.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RK | FBtr0078812 | 4502 | 1055aa | FBpp0078455 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IPN9 | NM_170640 NM_170640.3 NP_730911 NP_730911.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RO | FBtr0110932 | 4332 | 1025aa | FBpp0110232 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KNC5 | NM_001043214 NM_001043214.2 NP_001036679 NP_001036679.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RR | FBtr0273431 | 4175 | 789aa | FBpp0271939 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z0T6 | NM_001144535 NM_001144535.2 NP_001138007 NP_001138007.1 | - |
| mtd-RM | FBtr0100197 | 4083 | 1012aa | FBpp0099567 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C6TPB0 Q4ABH3 | NM_001031978 NM_001031978.2 NP_001027149 NP_001027149.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| mtd-RAA | FBtr0333695 | 3789 | 871aa | FBpp0305848 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KF88 | NM_001275350 NM_001275350.1 NP_001262279 NP_001262279.1 | - |
| mtd-RF | FBtr0078813 | 3783 | 869aa | FBpp0078456 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IPN8 | NM_170641 NM_170641.3 NP_730912 NP_730912.1 | - |
| mtd-RQ | FBtr0273430 | 2394 | 192aa | FBpp0271938 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IPN6 | NM_001144534 NM_001144534.2 NM_169045.2 NP_001138006 NP_001138006.1 NP_730916.1 | - |
| mtd-RC | FBtr0078815 | 2303 | 267aa | FBpp0078458 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KTR8 | NM_170643 NM_170643.3 NP_730914 NP_730914.1 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| mtd-RH | FBtr0078816 | 1675 | 192aa | FBpp0078459 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IPN6 | NM_001144534.2 NM_169045 NM_169045.2 NP_001138006.1 NP_730916 NP_730916.1 | - |
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