Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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DB built by FlyBase

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Gene: pug FBgn0020385

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Description

pugilist

Gene Synonyms

Location

Primary_assembly 3R: 10,696,534-10,703,316 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 193 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pug-RB	FBtr0082264	3273	968aa	FBpp0081741	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NH74 O96553 Q9XYB0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
pug-RD	FBtr0100144	3160	968aa	FBpp0099494	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NH74 O96553	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
pug-RE	FBtr0305662	3118	965aa	FBpp0296942	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K623 I1WYH4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pug-RA	FBtr0082265	3098	934aa	FBpp0081742	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7ZE33	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pug-RC	FBtr0082266	3044	934aa	FBpp0081743	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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