Summary
- Splice variants
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Sequence
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: Alms1b FBgn0025387

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Description

Alstrom syndrome 1b

Gene Synonyms

Location

Primary_assembly X: 4,627,380-4,630,936 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 3 transcripts (splice variants), 10 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Alms1b-RB	FBtr0335037	3310	987aa	FBpp0307043	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJ28 O77274	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Alms1b-RA	FBtr0070696	3292	981aa	FBpp0070664	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W4J0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Alms1b-RC	FBtr0343532	2876	826aa	FBpp0310136	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961M4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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