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DB built by FlyBase

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Gene: TTLL4A FBgn0026147

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Description

Tubulin tyrosine ligase-like 4A

Gene Synonyms

Location

Primary_assembly 2L: 10,989,401-10,997,897 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 10 transcripts (splice variants), 97 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
TTLL4A-RG	FBtr0300403	4069	1071aa	FBpp0289632	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPB2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
TTLL4A-RL	FBtr0304951	6903	1070aa	FBpp0293490	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEE5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
TTLL4A-RM	FBtr0304952	6836	827aa	FBpp0293491	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NCT3 Q95TA0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
TTLL4A-RK	FBtr0304950	5476	827aa	FBpp0293489	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NCT3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
TTLL4A-RN	FBtr0304953	5365	1070aa	FBpp0293492	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEE5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
TTLL4A-RI	FBtr0304948	4629	1070aa	FBpp0293487	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEE5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
TTLL4A-RD	FBtr0300400	3947	1071aa	FBpp0289629	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5RJK8 Q8IGW4 Q8IPB2	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
TTLL4A-RH	FBtr0300404	3943	1071aa	FBpp0289633	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPB2	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
TTLL4A-RE	FBtr0300401	3259	828aa	FBpp0289630	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKL9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
TTLL4A-RF	FBtr0300402	3255	828aa	FBpp0289631	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKL9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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