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DB built by FlyBase

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Gene: Nipped-B FBgn0026401

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Description

Nipped-B

Gene Synonyms

Location

Primary_assembly 2R: 4,691,672-4,729,017 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 6 transcripts (splice variants) and 167 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Nipped-B-RE	FBtr0111119	6711	2077aa	FBpp0110411	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7PLI2	NM_001042986.3 NM_001042987 NM_001042987.3 NP_001036451.1 NP_001036452 NP_001036452.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Nipped-B-RF	FBtr0111118	6683	2077aa	FBpp0110410	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7PLI2	NM_001042986 NM_001042986.3 NM_001042987.3 NP_001036451 NP_001036451.1 NP_001036452.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Nipped-B-RH	FBtr0301455	6639	2053aa	FBpp0290670	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGX3	NM_001169581.2 NM_001169582 NM_001169582.2 NM_001169583.2 NP_001163052.1 NP_001163053 NP_001163053.1 NP_001163054.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nipped-B-RI	FBtr0301456	6611	2053aa	FBpp0290671	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGX3	NM_001169581.2 NM_001169582.2 NM_001169583 NM_001169583.2 NP_001163052.1 NP_001163053.1 NP_001163054 NP_001163054.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nipped-B-RG	FBtr0301454	6604	2053aa	FBpp0290669	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHK9 E1JGX3	NM_001169581 NM_001169581.2 NM_001169582.2 NM_001169583.2 NP_001163052 NP_001163052.1 NP_001163053.1 NP_001163054.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Nipped-B-RJ	FBtr0334994	6273	1957aa	FBpp0307004	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF23	NM_001273774 NM_001273774.1 NP_001260703 NP_001260703.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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