Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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- Orthologues
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG1024 FBgn0027514

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Location

Primary_assembly 3R: 6,377,349-6,380,328 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 13 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG1024-RD	FBtr0332175	2570	543aa	FBpp0304484	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B9A0M7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG1024-RE	FBtr0332176	2506	543aa	FBpp0304485	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B9A0M7 Q9XZ30	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG1024-RB	FBtr0290212	1870	539aa	FBpp0288651	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VI18	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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