Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
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- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG2930 FBgn0028491

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Location

Primary_assembly X: 3,868,973-3,880,379 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 115 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG2930-RE	FBtr0340201	2683	815aa	FBpp0309176	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JCG8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG2930-RF	FBtr0340202	3701	810aa	FBpp0309177	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W4P6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG2930-RB	FBtr0070610	2818	810aa	FBpp0070583	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3PFE3 Q9U4G9 Q9W4P6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG2930-RA	FBtr0070609	2773	810aa	FBpp0070582	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W4P6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG2930-RD	FBtr0070608	2703	803aa	FBpp0070581	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRT1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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