Nckx30C
Primary_assembly 2L: 9,711,512-9,746,495 reverse strand.
BDGP6.32:AE014134.6
This gene has 5 transcripts (splice variants), 151 orthologues and 4 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Nckx30C-RD | FBtr0303908 | 8557 | 881aa | FBpp0292911 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E0R962 Q9U6A0 | NM_143754 NM_143754.5 NM_164869.3 NM_164870.3 NP_652011 NP_652011.3 NP_723482.1 NP_723483.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Nckx30C-RF | FBtr0335506 | 9590 | 847aa | FBpp0307474 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PCP1 | NM_001273367 NM_001273367.1 NP_001260296 NP_001260296.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Nckx30C-RE | FBtr0303909 | 4960 | 872aa | FBpp0292912 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9MRG0 | NM_001201832 NM_001201832.2 NP_001188761 NP_001188761.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Nckx30C-RA | FBtr0079928 | 4939 | 856aa | FBpp0079518 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_164869 NM_164869.3 NM_164870.3 NP_723482 NP_723482.1 NP_723483.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Nckx30C-RB | FBtr0079926 | 4912 | 856aa | FBpp0079516 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_164869.3 NM_164870 NM_164870.3 NP_723482.1 NP_723483 NP_723483.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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