VAMP-associated protein 33kDa
Primary_assembly X: 3,948,975-3,955,442 forward strand.
BDGP6.32:AE014298.5
This gene has 4 transcripts (splice variants), 80 orthologues and 1 paralogue.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Vap33-RE | FBtr0342739 | 3897 | 269aa | FBpp0309607 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YI35 Q9W4N8 | NM_130731.3 NM_206623 NM_206623.2 NM_206624.2 NP_570087.1 NP_996346 NP_996346.2 NP_996347.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Vap33-RC | FBtr0070618 | 3607 | 269aa | FBpp0089170 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9W4N8 | NM_130731.3 NM_206623.2 NM_206624 NM_206624.2 NP_570087.1 NP_996346.2 NP_996347 NP_996347.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Vap33-RB | FBtr0070616 | 2541 | 269aa | FBpp0070589 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9W4N8 | NM_130731 NM_130731.3 NM_206623.2 NM_206624.2 NP_570087 NP_570087.1 NP_996346.2 NP_996347.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Vap33-RA | FBtr0070617 | 2439 | 235aa | FBpp0089169 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KVX5 | NM_206625 NM_206625.2 NP_996348 NP_996348.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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