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DB built by FlyBase

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Gene: Pdcd4 FBgn0030520

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Description

Programmed cell death 4

Gene Synonyms

Location

Primary_assembly X: 13,745,577-13,755,406 reverse strand.

BDGP6.32:AE014298.5

About this gene

This gene has 4 transcripts (splice variants) and 114 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pdcd4-RC	FBtr0331711	3426	509aa	FBpp0304100	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VY91	NM_001103507.3 NM_001272603 NM_001272603.1 NM_001272604.1 NM_132690.4 NP_001096977.1 NP_001259532 NP_001259532.1 NP_001259533.1 NP_572918.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pdcd4-RB	FBtr0112981	3240	509aa	FBpp0111894	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VY91	NM_001103507 NM_001103507.3 NM_001272603.1 NM_001272604.1 NM_132690.4 NP_001096977 NP_001096977.1 NP_001259532.1 NP_001259533.1 NP_572918.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pdcd4-RD	FBtr0331712	3008	509aa	FBpp0304101	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VY91	NM_001103507.3 NM_001272603.1 NM_001272604 NM_001272604.1 NM_132690.4 NP_001096977.1 NP_001259532.1 NP_001259533 NP_001259533.1 NP_572918.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pdcd4-RA	FBtr0073840	2368	509aa	FBpp0073671	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YHD2 A9YHD3 A9YHE2 B4YX26 B4YX27 F6J2G4 F6J2G6 F6J2G8 F6J2H2 Q9VY91	NM_001103507.3 NM_001272603.1 NM_001272604.1 NM_132690 NM_132690.4 NP_001096977.1 NP_001259532.1 NP_001259533.1 NP_572918 NP_572918.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays