cervantes
Primary_assembly X: 15,576,986-15,578,171 reverse strand.
BDGP6.32:AE014298.5
This gene has 3 transcripts (splice variants), 21 orthologues and 1 paralogue.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| cerv-RD | FBtr0346182 | 1141 | 230aa | FBpp0312001 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VXT3 | NM_001298349 NM_001298349.1 NM_132815.3 NP_001285278 NP_001285278.1 NP_573043.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| cerv-RA | FBtr0089702 | 968 | 230aa | FBpp0088643 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q008Y9 Q9VXT3 | NM_001298349.1 NM_132815 NM_132815.3 NP_001285278.1 NP_573043 NP_573043.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| cerv-RC | FBtr0310052 | 952 | 177aa | FBpp0301753 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5IF45 Q5IF49 Q8IR31 | NM_167453 NM_167453.3 NP_727868 NP_727868.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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