Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: CG4678 FBgn0030778

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Gene Synonyms

Location

Primary_assembly X: 16,696,131-16,711,145 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 8 transcripts (splice variants), 127 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4678-RE	FBtr0300033	1994	527aa	FBpp0289310	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0Z5	NM_001144739 NM_001144739.2 NP_001138211 NP_001138211.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG4678-RL	FBtr0339829	2062	474aa	FBpp0308863	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A023GPN7	NM_001038761 NM_001038761.2 NP_001033850 NP_001033850.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4678-RD	FBtr0300032	2007	518aa	FBpp0289309	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0Z6 G4LU56	NM_001144738 NM_001144738.2 NP_001138210 NP_001138210.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4678-RJ	FBtr0339827	1982	523aa	FBpp0308861	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JFS7	NM_001298415 NM_001298415.1 NP_001285344 NP_001285344.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4678-RI	FBtr0308847	1952	513aa	FBpp0301002	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFA0	NM_001258789 NM_001258789.2 NP_001245718 NP_001245718.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4678-RG	FBtr0300035	1902	488aa	FBpp0289312	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4N7	NM_167536 NM_167536.4 NP_728012 NP_728012.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4678-RF	FBtr0300034	1875	479aa	FBpp0289311	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MRP2 Q9VXC4	NM_132924 NM_132924.4 NP_573152 NP_573152.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4678-RK	FBtr0339828	1670	404aa	FBpp0308862	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JC90	NM_001298416 NM_001298416.1 NP_001285345 NP_001285345.1	-

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Summary

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Gene-based displays