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DB built by FlyBase

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Gene: Pvf1 FBgn0030964

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Description

PDGF- and VEGF-related factor 1

Gene Synonyms

Location

Primary_assembly X: 18,832,682-18,842,901 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 3 transcripts (splice variants) and 110 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pvf1-RA	FBtr0074640	1896	325aa	FBpp0074411	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VWP6	NM_078683 NM_078683.3 NP_523407 NP_523407.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Pvf1-RC	FBtr0343604	2783	300aa	FBpp0310199	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JCH3	NM_001298486 NM_001298486.1 NP_001285415 NP_001285415.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pvf1-RB	FBtr0301667	1804	314aa	FBpp0290881	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9BLX1	NM_001169321 NM_001169321.2 NP_001162792 NP_001162792.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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