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DB built by FlyBase

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Gene: Usp2 FBgn0031187

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Description

Ubiquitin specific protease 2

Gene Synonyms

Location

Primary_assembly X: 22,455,803-22,470,146 forward strand.

BDGP6.54:AE014298.5

About this gene

This gene has 9 transcripts (splice variants), 82 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Usp2-RI	FBtr0339507	4341	950aa	FBpp0308590	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JG37	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp2-RG	FBtr0309239	5178	938aa	FBpp0301178	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQ27	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp2-RC	FBtr0077349	4711	938aa	FBpp0077041	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQ27	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp2-RF	FBtr0309238	4305	938aa	FBpp0301177	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQ27	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp2-RH	FBtr0339506	3992	565aa	FBpp0308589	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JLM6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp2-RA	FBtr0077348	3434	856aa	FBpp0077040	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR54	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp2-RD	FBtr0077347	3247	856aa	FBpp0077039	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR54	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp2-RE	FBtr0077346	3194	856aa	FBpp0077038	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR54	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp2-RK	FBtr0392899	1420	315aa	FBpp0352241	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6SUY9 Q8IQ26	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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