Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: CG5001 FBgn0031322

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Location

Primary_assembly 2L: 1,185,757-1,196,807 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 129 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5001-RB	FBtr0307056	1893	350aa	FBpp0297899	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VPY9	NM_001258903 NM_001258903.1 NM_001272932.1 NM_134742.4 NP_001245832 NP_001245832.1 NP_001259861.1 NP_608586.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5001-RA	FBtr0077972	1833	350aa	FBpp0077637	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5BIK1 Q9VPY9	NM_001258903.1 NM_001272932.1 NM_134742 NM_134742.4 NP_001245832.1 NP_001259861.1 NP_608586 NP_608586.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5001-RC	FBtr0307057	1825	346aa	FBpp0297900	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NCP5	NM_001258904 NM_001258904.2 NP_001245833 NP_001245833.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG5001-RD	FBtr0335379	1755	350aa	FBpp0307363	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VPY9	NM_001258903.1 NM_001272932 NM_001272932.1 NM_134742.4 NP_001245832.1 NP_001259861 NP_001259861.1 NP_608586.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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Gene-based displays