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DB built by FlyBase

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Gene: Oatp30B FBgn0032123

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Description

Organic anion transporting polypeptide 30B

Gene Synonyms

Location

Primary_assembly 2L: 9,521,210-9,540,060 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 92 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Oatp30B-RA	FBtr0079825	5535	1197aa	FBpp0079423	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6IDW0 Q8IH70 Q9VLB3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Oatp30B-RB	FBtr0079826	5480	1197aa	FBpp0079424	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VLB3	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Oatp30B-RC	FBtr0079827	5339	1197aa	FBpp0079425	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VLB3	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Oatp30B-RD	FBtr0079828	4876	1136aa	FBpp0079426	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTG4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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