Summary
- Splice variants
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DB built by FlyBase

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Gene: CG9485 FBgn0034618

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Location

Primary_assembly 2R: 21,312,399-21,319,569 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 6 transcripts (splice variants) and 207 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG9485-RB	FBtr0071600	5146	1629aa	FBpp0071526	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHE8 C7LAB1 Q1WWH5 Q960T9 Q9W2H8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG9485-RD	FBtr0300394	4969	1563aa	FBpp0289623	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGQ5	-	-
CG9485-RA	FBtr0071599	4906	1542aa	FBpp0071525	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVP4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG9485-RC	FBtr0071601	4904	1546aa	FBpp0071527	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAD6 Q86BS7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG9485-RE	FBtr0300395	4863	1542aa	FBpp0289624	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVP4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG9485-RF	FBtr0310327	4860	1542aa	FBpp0302010	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVP4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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