Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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DB built by FlyBase

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Gene: CG3860 FBgn0034951

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Gene Synonyms

Location

Primary_assembly 2R: 23,992,138-23,995,055 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 2 transcripts (splice variants), 111 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG3860-RB	FBtr0343288	2113	457aa	FBpp0309953	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGH8	NM_001299873 NM_001299873.1 NP_001286802 NP_001286802.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG3860-RA	FBtr0072201	2107	455aa	FBpp0072110	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W1D9	NM_138021 NM_138021.3 NP_611865 NP_611865.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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Gene-based displays