Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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- Orthologues
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG12502 FBgn0035171

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Location

Primary_assembly 3L: 865,396-871,701 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 3 transcripts (splice variants) and 88 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12502-RD	FBtr0339892	3735	738aa	FBpp0308924	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0L8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG12502-RC	FBtr0304699	3453	644aa	FBpp0293242	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEF1 M9NDE4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12502-RB	FBtr0300345	2830	738aa	FBpp0289574	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0L8	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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