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DB built by FlyBase

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Gene: PAN3 FBgn0035397

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Description

Poly(A) specific ribonuclease subunit PAN3

Gene Synonyms

Location

Primary_assembly 3L: 3,071,133-3,090,406 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 16 transcripts (splice variants) and 72 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
PAN3-RG	FBtr0072991	3281	790aa	FBpp0072861	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RR8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PAN3-RM	FBtr0073000	5010	788aa	FBpp0072870	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KV83	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
PAN3-RK	FBtr0072998	4892	788aa	FBpp0072868	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KV83	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
PAN3-RR	FBtr0332113	4616	757aa	FBpp0304423	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRE7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PAN3-RC	FBtr0072994	4553	780aa	FBpp0072864	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DMN9 Q9VZV3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PAN3-RQ	FBtr0113131	3277	788aa	FBpp0112044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KV83	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
PAN3-RF	FBtr0073002	3228	788aa	FBpp0072872	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KV83	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
PAN3-RN	FBtr0073001	3203	788aa	FBpp0072871	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KV83	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
PAN3-RH	FBtr0073003	3171	788aa	FBpp0072873	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KV83	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
PAN3-RP	FBtr0113130	3145	757aa	FBpp0112043	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRE7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PAN3-RJ	FBtr0072992	3133	788aa	FBpp0072862	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KV83	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
PAN3-RL	FBtr0072999	3027	757aa	FBpp0072869	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IRE7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PAN3-RB	FBtr0072993	2831	742aa	FBpp0072863	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7T8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PAN3-RA	FBtr0072996	2822	742aa	FBpp0072866	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7T8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PAN3-RO	FBtr0113129	2688	749aa	FBpp0112042	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNJ2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
PAN3-RD	FBtr0072995	2624	742aa	FBpp0072865	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7T8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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