Poly(A) specific ribonuclease subunit PAN3
Primary_assembly 3L: 3,071,133-3,090,406 forward strand.
BDGP6.32:AE014296.5
This gene has 16 transcripts (splice variants) and 132 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| PAN3-RG | FBtr0072991 | 3281 | 790aa | FBpp0072861 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q95RR8 | NM_139510 NM_139510.4 NP_647767 NP_647767.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| PAN3-RM | FBtr0073000 | 5010 | 788aa | FBpp0072870 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KV83 | NM_001104018.2 NM_167975.3 NM_167976.3 NM_167977 NM_167977.3 NM_167978.3 NM_206260.3 NM_206261.3 NP_001097488.1 NP_728797.1 NP_728798.1 NP_728799 NP_728799.1 NP_728800.1 NP_995982.1 NP_995983.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RK | FBtr0072998 | 4892 | 788aa | FBpp0072868 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KV83 | NM_001104018.2 NM_167975.3 NM_167976 NM_167976.3 NM_167977.3 NM_167978.3 NM_206260.3 NM_206261.3 NP_001097488.1 NP_728797.1 NP_728798 NP_728798.1 NP_728799.1 NP_728800.1 NP_995982.1 NP_995983.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RR | FBtr0332113 | 4616 | 757aa | FBpp0304423 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IRE7 | NM_001104017.2 NM_167979.3 NM_167981 NM_167981.2 NP_001097487.1 NP_728801.1 NP_728803 NP_728803.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RC | FBtr0072994 | 4553 | 780aa | FBpp0072864 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D3DMN9 Q9VZV3 | NM_167980 NM_167980.3 NP_728802 NP_728802.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RQ | FBtr0113131 | 3277 | 788aa | FBpp0112044 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KV83 | NM_001104018 NM_001104018.2 NM_167975.3 NM_167976.3 NM_167977.3 NM_167978.3 NM_206260.3 NM_206261.3 NP_001097488 NP_001097488.1 NP_728797.1 NP_728798.1 NP_728799.1 NP_728800.1 NP_995982.1 NP_995983.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RF | FBtr0073002 | 3228 | 788aa | FBpp0072872 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KV83 | NM_001104018.2 NM_167975.3 NM_167976.3 NM_167977.3 NM_167978.3 NM_206260.3 NM_206261 NM_206261.3 NP_001097488.1 NP_728797.1 NP_728798.1 NP_728799.1 NP_728800.1 NP_995982.1 NP_995983 NP_995983.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RN | FBtr0073001 | 3203 | 788aa | FBpp0072871 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KV83 | NM_001104018.2 NM_167975.3 NM_167976.3 NM_167977.3 NM_167978 NM_167978.3 NM_206260.3 NM_206261.3 NP_001097488.1 NP_728797.1 NP_728798.1 NP_728799.1 NP_728800 NP_728800.1 NP_995982.1 NP_995983.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RH | FBtr0073003 | 3171 | 788aa | FBpp0072873 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KV83 | NM_001104018.2 NM_167975.3 NM_167976.3 NM_167977.3 NM_167978.3 NM_206260 NM_206260.3 NM_206261.3 NP_001097488.1 NP_728797.1 NP_728798.1 NP_728799.1 NP_728800.1 NP_995982 NP_995982.1 NP_995983.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RP | FBtr0113130 | 3145 | 757aa | FBpp0112043 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IRE7 | NM_001104017 NM_001104017.2 NM_167979.3 NM_167981.2 NP_001097487 NP_001097487.1 NP_728801.1 NP_728803.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RJ | FBtr0072992 | 3133 | 788aa | FBpp0072862 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KV83 | NM_001104018.2 NM_167975 NM_167975.3 NM_167976.3 NM_167977.3 NM_167978.3 NM_206260.3 NM_206261.3 NP_001097488.1 NP_728797 NP_728797.1 NP_728798.1 NP_728799.1 NP_728800.1 NP_995982.1 NP_995983.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RL | FBtr0072999 | 3027 | 757aa | FBpp0072869 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8IRE7 | NM_001104017.2 NM_167979 NM_167979.3 NM_167981.2 NP_001097487.1 NP_728801 NP_728801.1 NP_728803.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RB | FBtr0072993 | 2831 | 742aa | FBpp0072863 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9I7T8 | NM_167982.3 NM_167983 NM_167983.3 NM_167984.3 NP_728804.1 NP_728805 NP_728805.1 NP_728806.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RA | FBtr0072996 | 2822 | 742aa | FBpp0072866 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9I7T8 | NM_167982 NM_167982.3 NM_167983.3 NM_167984.3 NP_728804 NP_728804.1 NP_728805.1 NP_728806.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RO | FBtr0113129 | 2688 | 749aa | FBpp0112042 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JNJ2 | NM_001104016 NM_001104016.2 NP_001097486 NP_001097486.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| PAN3-RD | FBtr0072995 | 2624 | 742aa | FBpp0072865 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9I7T8 | NM_167982.3 NM_167983.3 NM_167984 NM_167984.3 NP_728804.1 NP_728805.1 NP_728806 NP_728806.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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