Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
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Genetic Variation
- Variant table
- Variant image
- Structural variants
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DB built by FlyBase

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Gene: CG12017 FBgn0035429

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Location

Primary_assembly 3L: 3,280,239-3,290,896 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants) and 55 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12017-RA	FBtr0073052	2477	594aa	FBpp0072916	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MRG7 Q9VZR7	NM_139541 NM_139541.3 NP_647798 NP_647798.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG12017-RB	FBtr0308311	2667	522aa	FBpp0300630	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFK8	NM_001259666 NM_001259666.2 NP_001246595 NP_001246595.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12017-RC	FBtr0308312	2462	589aa	FBpp0300631	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND35	NM_001259667 NM_001259667.2 NP_001246596 NP_001246596.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12017-RD	FBtr0308313	2447	584aa	FBpp0300632	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEZ6	NM_001259668 NM_001259668.2 NP_001246597 NP_001246597.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays